[Genomedata-users] PPC Mac failure on test the PyTables Installation

[Orion Buske]

Hi David,

I believe that genomedata_load_data.c is getting compiled before the egg 
is created, thus making the "easy_install genomedata" grab a 
pre-compiled genomedata-load-data instead of compiling it during 
installation. The fix is as follows:

1) Download the source:
$ wget 
http://noble.gs.washington.edu/proj/genomedata/genomedata-1.1.1.tar.gz

2) Install it:
$ tar -xzf genomedata-1.1.1.tar.gz
$ cd genomedata-1.1.1
$ python setup.py install


Then you can try that genomedata-load command from before to test, but 
this should work.

Cheers,
Orion

David Mead wrote:

> Looks like genomedata-load-data does have problems.  I've also attached 

> the original install log in case that can give a clue as to what went 

> wrong.

> 

> Thanks,

> 

> David

> 

> david-meads-power-mac-g5:~ dwm08$ which genomedata-load-data

> /Users/dwm08/arch/Darwin-Power/bin/genomedata-load-data

> david-meads-power-mac-g5:~ dwm08$ genomedata-load-data

> -bash: /Users/dwm08/arch/Darwin-Power/bin/genomedata-load-data: cannot 

> execute binary file

> david-meads-power-mac-g5:~ dwm08$ easy_install genomedata

> Searching for genomedata

> Best match: genomedata 1.1.1

> Processing genomedata-1.1.1-py2.5.egg

> genomedata 1.1.1 is already the active version in easy-install.pth

> Installing genomedata-load-data script to 

> /Users/dwm08/arch/Darwin-Power/bin

> Installing genomedata-load-seq script to /Users/dwm08/arch/Darwin-Power/bin

> Installing genomedata-open-data script to 

> /Users/dwm08/arch/Darwin-Power/bin

> Installing genomedata-load script to /Users/dwm08/arch/Darwin-Power/bin

> Installing genomedata-close-data script to 

> /Users/dwm08/arch/Darwin-Power/bin

> Installing genomedata-report script to /Users/dwm08/arch/Darwin-Power/bin

> Installing genomedata-erase-data script to 

> /Users/dwm08/arch/Darwin-Power/bin

> 

> Using 

> /Users/dwm08/arch/Darwin-Power/lib/python2.5/genomedata-1.1.1-py2.5.egg

> Processing dependencies for genomedata

> Finished processing dependencies for genomedata

>